STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00956.1Hypothetical protein. (600 aa)    
Predicted Functional Partners:
SKD00959.1
Protein of unknown function.
 
     0.890
SKC99873.1
Uncharacterized lipoprotein YddW, UPF0748 family.
  
  
 0.784
SKD00953.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.773
SKC99309.1
Arylsulfotransferase (ASST).
  
  
  0.759
SKC99306.1
Starch-binding associating with outer membrane.
  
 
   0.746
SKC99879.1
Starch-binding associating with outer membrane.
  
     0.741
SKD09553.1
Arylsulfotransferase (ASST).
  
  
  0.731
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.708
SKC99882.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.707
SKD09552.1
Starch-binding associating with outer membrane.
  
     0.688
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.