Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD00959.1Protein of unknown function. (603 aa)    
Predicted Functional Partners:
SKD00956.1
Hypothetical protein.
 
     0.890
SKD00953.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.697
SKD00966.1
Glucokinase.
 
  
  0.696
SKC98325.1
Uncharacterized protein, contains GBA2_N and DUF608 domains.
  
     0.674
SKD08891.1
Hypothetical protein.
  
  
  0.661
SKD00961.1
Gluconate 2-dehydrogenase subunit 3.
       0.639
SKD00963.1
Choline dehydrogenase.
       0.639
SKD09534.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
   
 0.613
SKD09047.1
Glycosyl hydrolase family 65, N-terminal domain.
 
  
  0.604
SKD00976.1
Glycosyl hydrolases family 16.
    
 0.590
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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