STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00959.1Protein of unknown function. (603 aa)    
Predicted Functional Partners:
SKD00956.1
Hypothetical protein.
 
     0.890
SKD00953.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.697
SKD00966.1
Glucokinase.
 
  
  0.686
SKC98325.1
Uncharacterized protein, contains GBA2_N and DUF608 domains.
  
     0.674
SKD08891.1
Hypothetical protein.
  
  
  0.662
SKD00961.1
Gluconate 2-dehydrogenase subunit 3.
       0.639
SKD00963.1
Choline dehydrogenase.
       0.639
SKD09047.1
Glycosyl hydrolase family 65, N-terminal domain.
 
  
  0.584
SKC99879.1
Starch-binding associating with outer membrane.
  
  
  0.569
SKD09552.1
Starch-binding associating with outer membrane.
  
  
  0.568
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.