STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00961.1Gluconate 2-dehydrogenase subunit 3. (181 aa)    
Predicted Functional Partners:
SKD00963.1
Choline dehydrogenase.
 
 0.965
SKC97034.1
Choline dehydrogenase.
 
 0.869
SKC97031.1
Choline dehydrogenase.
 
 0.853
SKD09892.1
Choline dehydrogenase.
 
 0.852
SKD08192.1
Choline dehydrogenase.
 
 0.812
SKD08310.1
Hydroxypyruvate isomerase.
 
     0.709
SKD09711.1
Protein of unknown function.
 
     0.686
SKD00968.1
Glucosamine-6-phosphate isomerase; Manually curated.
    
  0.666
SKD04432.1
Protein of unknown function.
 
     0.665
SKD07725.1
Nucleoside transporter.
 
     0.656
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.