STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00963.1Choline dehydrogenase. (572 aa)    
Predicted Functional Partners:
SKD00961.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.965
SKC97038.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.854
SKD02784.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.851
SKD09893.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.837
SKD05204.1
Hypothetical protein.
    
 0.827
SKD09049.1
Ankyrin repeat-containing protein.
    
 0.827
SKD09050.1
Ankyrin repeat.
    
 0.827
SKD09593.1
Hypothetical protein.
    
 0.827
SKD09763.1
Uncharacterized conserved protein YegJ, DUF2314 family.
    
 0.827
SKD09764.1
Ankyrin repeat.
    
 0.827
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.