Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD00963.1Choline dehydrogenase. (572 aa)    
Predicted Functional Partners:
SKD00961.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.962
SKC97038.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.843
SKD09893.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.824
SKD02784.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.812
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.726
SKD02331.1
Sugar phosphate isomerase/epimerase.
 
  
  0.700
SKD00968.1
Glucosamine-6-phosphate isomerase; Manually curated.
  
 
  0.696
SKD00966.1
Glucokinase.
    
  0.692
SKD09711.1
Protein of unknown function.
 
     0.675
SKD00956.1
Hypothetical protein.
    
  0.667
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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