STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD01242.1Por secretion system C-terminal sorting domain-containing protein. (117 aa)    
Predicted Functional Partners:
SKD01238.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.802
SKD02765.1
YcxB-like protein.
  
     0.771
SKD10119.1
YD repeat-containing protein.
  
     0.771
SKD00017.1
Hypothetical protein.
  
     0.770
SKD05848.1
Hypothetical protein.
  
     0.767
SKD05837.1
Hypothetical protein.
  
     0.766
SKD00396.1
Putative porin.
  
     0.765
SKD01642.1
Hypothetical protein.
  
     0.765
SKD08677.1
Hypothetical protein.
  
     0.765
SKD00345.1
Hypothetical protein.
  
     0.760
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.