Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD01316.1Predicted phospholipase, patatin/cPLA2 family. (333 aa)    
Predicted Functional Partners:
SKD01312.1
DinB superfamily protein.
       0.651
SKD04222.1
PAP2 superfamily protein.
 
  
  0.512
SKD00501.1
Helix-turn-helix.
  
     0.462
SKD05457.1
RHS repeat-associated core domain-containing protein.
  
     0.452
SKD09675.1
Fe-S oxidoreductase.
 
  
  0.443
SKD07048.1
Hypothetical protein.
  
     0.442
SKC96359.1
Starch-binding associating with outer membrane.
  
     0.438
SKD08915.1
Hypothetical protein.
  
     0.436
SKD02174.1
Starch-binding associating with outer membrane.
  
     0.422
SKD09932.1
Protein of unknown function.
  
     0.417
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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