Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD01462.1Hypothetical protein. (466 aa)    
Predicted Functional Partners:
SKD08345.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.615
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.496
SKD01460.1
Branched-chain amino acid aminotransferase.
       0.493
SKD01458.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.475
SKD01465.1
3-oxoacid CoA-transferase subunit B.
       0.465
SKD01474.1
Protein of unknown function.
 
     0.459
SKD08230.1
Hypothetical protein.
  
     0.443
SKD05247.1
Hypothetical protein.
  
 
  0.427
SKD07949.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.427
SKD06375.1
Cupin domain-containing protein.
  
  
  0.420
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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