Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD01645.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
SKD08108.1
Ligand-binding SRPBCC domain-containing protein.
     0.654
SKD05999.1
Zinc transporter ZupT.
  
    0.542
SKD00348.1
Iron (metal) dependent repressor, DtxR family.
   
    0.516
SKD01642.1
Hypothetical protein.
       0.496
SKD07695.1
Protein of unknown function.
   
    0.480
SKD01640.1
Hypothetical protein.
       0.478
SKD09823.1
Apolipoprotein D and lipocalin family protein; Belongs to the calycin superfamily. Lipocalin family.
     0.427
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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