STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD01875.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (651 aa)    
Predicted Functional Partners:
SKD01880.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.976
SKD09006.1
Two component transcriptional regulator, LuxR family.
 
  0.899
SKD09831.1
Two component transcriptional regulator, LuxR family.
 
  0.899
SKD10239.1
Two component transcriptional regulator, LuxR family.
 
  0.899
SKD09447.1
Two component transcriptional regulator, LuxR family.
 
  0.898
SKD02058.1
Two component transcriptional regulator, LuxR family.
 
  0.897
SKD09996.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.897
SKC95343.1
Two component transcriptional regulator, LuxR family.
 
  0.896
SKD05046.1
Two component transcriptional regulator, LuxR family.
 
  0.895
SKD06955.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.895
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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