STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD02133.1O-Glycosyl hydrolase. (508 aa)    
Predicted Functional Partners:
SKD09259.1
Xylan 1,4-beta-xylosidase.
  
  
  0.895
SKD02136.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
 0.891
SKD00722.1
Xylan 1,4-beta-xylosidase.
  
  
  0.829
SKD02130.1
Starch-binding associating with outer membrane.
 
  
  0.708
SKC94865.1
Glycosyl hydrolase catalytic core.
    
 0.704
SKC95740.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.666
SKD09534.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.640
SKD09898.1
Glycosyltransferase, GT2 family.
    
 0.590
SKD02127.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.588
SKC95784.1
Beta-xylosidase.
  
 
 0.576
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.