Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD02159.1Uncharacterized conserved protein. (112 aa)    
Predicted Functional Partners:
SKD02162.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.907
SKC94905.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.782
SKC98288.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.782
SKD02156.1
Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.687
SKD02165.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.588
SKD09923.1
Hypothetical protein.
  
     0.504
SKD09319.1
Hypothetical protein.
  
     0.495
SKD10341.1
SnoaL-like domain-containing protein.
  
     0.467
SKD08091.1
Outer membrane protein TolC.
  
     0.447
SKD02168.1
Protein of unknown function.
       0.436
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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