SKD02220.1 protein (Chitinophaga ginsengisegetis)

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SKD02220.1

RNA polymerase sigma-70 factor, ECF subfamily. (195 aa)

Predicted Functional Partners:

SKD02225.1

0.773

SKD04205.1

0.770

SKD08257.1

0.770

SKD02026.1

0.768

SKC97806.1

0.764

SKD09745.1

0.762

SKD06259.1

0.758

SKD08801.1

0.758

SKC97720.1

0.754

SKD09113.1

0.754

Your Current Organism:

Chitinophaga ginsengisegetis

NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC97720.1	SKD02220.1	SAMN05660461_0987	SAMN05660461_2451	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.754
SKC97806.1	SKD02220.1	SAMN05660461_1010	SAMN05660461_2451	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.764
SKC97806.1	SKD08257.1	SAMN05660461_1010	SAMN05660461_4210	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.765
SKD02026.1	SKD02220.1	SAMN05660461_2386	SAMN05660461_2451	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.768
SKD02026.1	SKD08257.1	SAMN05660461_2386	SAMN05660461_4210	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.767
SKD02220.1	SKC97720.1	SAMN05660461_2451	SAMN05660461_0987	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.754
SKD02220.1	SKC97806.1	SAMN05660461_2451	SAMN05660461_1010	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.764
SKD02220.1	SKD02026.1	SAMN05660461_2451	SAMN05660461_2386	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.768
SKD02220.1	SKD02225.1	SAMN05660461_2451	SAMN05660461_2452	RNA polymerase sigma-70 factor, ECF subfamily.	Hypothetical protein.	0.773
SKD02220.1	SKD04205.1	SAMN05660461_2451	SAMN05660461_2783	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.770
SKD02220.1	SKD06259.1	SAMN05660461_2451	SAMN05660461_3364	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.758
SKD02220.1	SKD08257.1	SAMN05660461_2451	SAMN05660461_4210	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.770
SKD02220.1	SKD08801.1	SAMN05660461_2451	SAMN05660461_4678	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.758
SKD02220.1	SKD09113.1	SAMN05660461_2451	SAMN05660461_4994	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.754
SKD02220.1	SKD09745.1	SAMN05660461_2451	SAMN05660461_5637	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.762
SKD02225.1	SKD02220.1	SAMN05660461_2452	SAMN05660461_2451	Hypothetical protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.773
SKD04205.1	SKD02220.1	SAMN05660461_2783	SAMN05660461_2451	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.770
SKD06259.1	SKD02220.1	SAMN05660461_3364	SAMN05660461_2451	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.758
SKD06259.1	SKD08257.1	SAMN05660461_3364	SAMN05660461_4210	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.763
SKD08257.1	SKC97806.1	SAMN05660461_4210	SAMN05660461_1010	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.765