STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD02342.1Glucose/arabinose dehydrogenase, beta-propeller fold. (1137 aa)    
Predicted Functional Partners:
SKD02339.1
Hypothetical protein.
 
  
 
0.976
SKD09598.1
Cytochrome c551/c552.
 
  
  0.956
SKD09686.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
 
 0.953
SKD04504.1
Cytochrome c, mono-and diheme variants.
 
 
 0.947
SKD10026.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
 
 0.943
SKC99121.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
 
 0.937
SKC95157.1
Cytochrome c.
 
  
 
0.908
SKD10037.1
Cytochrome c.
 
  
 
0.904
SKD05133.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
 
  0.861
SKC99013.1
Putative heme-binding domain-containing protein.
 
 
  0.830
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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