Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD02967.1Protein of unknown function DUF58. (288 aa)    
Predicted Functional Partners:
SKD02970.1
MoxR-like ATPase.
  
 0.945
SKD02961.1
Ca-activated chloride channel family protein.
 
  
 0.932
SKD02964.1
Hypothetical protein.
 
    0.932
SKD06444.1
MoxR-like ATPase.
  
 0.829
SKD08087.1
Ca-activated chloride channel family protein.
 
  
 0.827
SKD08382.1
Oxygen tolerance.
 
  
 0.809
SKD08380.1
TPR repeat-containing protein.
 
     0.765
SKD08088.1
TPR repeat-containing protein.
 
  
 0.758
rsgA
Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.504
SKD06442.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.407
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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