Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD03068.1AraC-like ligand binding domain-containing protein. (312 aa)    
Predicted Functional Partners:
SKD08274.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.659
SKD06241.1
AraC-type DNA-binding protein.
  
     0.655
SKC95818.1
Helix-turn-helix domain-containing protein.
  
     0.654
SKD10335.1
AraC-type DNA-binding protein.
  
     0.552
SKD03070.1
Predicted oxidoreductase.
       0.542
SKD10269.1
AraC-type DNA-binding protein.
  
     0.491
SKC95395.1
AraC-type DNA-binding protein.
  
     0.459
SKC99106.1
AraC-type DNA-binding protein.
  
     0.449
SKD00385.1
Helix-turn-helix domain-containing protein.
  
     0.432
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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