Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD04264.1IPT/TIG domain-containing protein. (717 aa)    
Predicted Functional Partners:
SKD04279.1
Fasciclin domain-containing protein.
 
     0.880
SKD04275.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
 
     0.836
SKD04299.1
TonB-dependent receptor.
 
     0.831
SKD04283.1
Fasciclin domain-containing protein.
 
     0.813
SKD04269.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.776
SKC97825.1
Hypothetical protein.
  
     0.767
SKD08345.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.757
SKD01029.1
Protein of unknown function.
  
  
  0.755
SKC97170.1
Hypothetical protein.
  
     0.747
SKD08589.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
    
 0.726
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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