STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD04482.1Starch-binding associating with outer membrane. (588 aa)    
Predicted Functional Partners:
SKD04488.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.935
SKD04478.1
Protein of unknown function.
 
  
  0.848
SKD08899.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.812
SKD09988.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.810
SKD06171.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.797
SKD02032.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.778
SKD09532.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.778
SKD00616.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.774
SKD04384.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.772
SKC98355.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.769
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.