Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SKD04508.1Cytochrome c. (133 aa)    
Predicted Functional Partners:
SKD04504.1
Cytochrome c, mono-and diheme variants.
 
 
 0.864
SKD08345.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.768
SKD08589.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
    
 0.727
SKD02339.1
Hypothetical protein.
     
  0.711
SKD02342.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
     
  0.711
SKD07682.1
16S rRNA (cytidine1402-2'-O)-methyltransferase.
  
     0.619
SKD08651.1
Sulfane dehydrogenase subunit SoxC.
   
 0.598
SKC94855.1
Oxidoreductase molybdopterin binding domain-containing protein.
   
 0.597
SKC99747.1
Oxidoreductase molybdopterin binding domain-containing protein.
   
 0.597
SKC99121.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
 
 0.486
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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