Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKD04534.1Protein of unknown function. (465 aa)    
Predicted Functional Partners:
SKD04528.1
Substrate import-associated zinc metallohydrolase lipoprotein.
 
    0.935
SKD04526.1
Starch-binding associating with outer membrane.
 
     0.904
SKD04522.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.894
SKC95242.1
Substrate import-associated zinc metallohydrolase lipoprotein.
 
    0.802
SKC95249.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.778
SKC95244.1
SusD family protein.
 
     0.777
SKC95238.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.722
SKD04537.1
Hypothetical protein.
       0.693
SKC95236.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.640
SKD05247.1
Hypothetical protein.
  
     0.616
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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