Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD04955.1Colanic acid biosynthesis glycosyl transferase WcaI. (411 aa)    
Predicted Functional Partners:
SKD04976.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
 
 
 0.843
SKD04979.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.834
SKD04982.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.826
SKD04993.1
Succinoglycan biosynthesis protein ExoV.
 
 
  0.811
SKD04951.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.803
SKD05006.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.768
SKD05012.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.759
SKD05009.1
Hypothetical protein.
  
 
 0.744
SKD10362.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
  
 0.742
SKD05026.1
UDP-glucose dehydrogenase.
  
 
 0.735
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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