Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKD05043.1Polysaccharide export outer membrane protein. (268 aa)    
Predicted Functional Partners:
SKD05039.1
Capsular exopolysaccharide family.
 
 0.997
SKD09649.1
Capsular exopolysaccharide family.
 
 0.990
SKD09280.1
Capsular exopolysaccharide family.
 
 0.989
SKC94665.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.972
SKD09289.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.954
SKD09648.1
Polysaccharide export outer membrane protein.
  
  
 
0.846
SKD09279.1
Polysaccharide export outer membrane protein.
  
  
 
0.837
SKD07919.1
Chain length determinant protein.
  
 0.762
SKD04951.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.740
SKD05032.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.700
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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