Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC96149.1 | SKD01156.1 | SAMN05660461_0616 | SAMN05660461_2085 | Bifunctional non-homologous end joining protein LigD. | DNA ligase-1. | 0.523 |
SKC96149.1 | SKD05185.1 | SAMN05660461_0616 | SAMN05660461_3033 | Bifunctional non-homologous end joining protein LigD. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.802 |
SKC96149.1 | SKD08013.1 | SAMN05660461_0616 | SAMN05660461_3964 | Bifunctional non-homologous end joining protein LigD. | Bifunctional non-homologous end joining protein LigD. | 0.795 |
SKC99912.1 | SKD05185.1 | SAMN05660461_1644 | SAMN05660461_3033 | Regulator of sigma E protease. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.755 |
SKC99912.1 | SKD06475.1 | SAMN05660461_1644 | SAMN05660461_3442 | Regulator of sigma E protease. | Lipoprotein-releasing system permease protein. | 0.417 |
SKC99912.1 | SKD07951.1 | SAMN05660461_1644 | SAMN05660461_3902 | Regulator of sigma E protease. | Beta-barrel assembly machine subunit BamA. | 0.835 |
SKC99912.1 | secF | SAMN05660461_1644 | SAMN05660461_6070 | Regulator of sigma E protease. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.553 |
SKC99912.1 | yidC | SAMN05660461_1644 | SAMN05660461_1814 | Regulator of sigma E protease. | YidC/Oxa1 family membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.717 |
SKD01156.1 | SKC96149.1 | SAMN05660461_2085 | SAMN05660461_0616 | DNA ligase-1. | Bifunctional non-homologous end joining protein LigD. | 0.523 |
SKD01156.1 | SKD05185.1 | SAMN05660461_2085 | SAMN05660461_3033 | DNA ligase-1. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.791 |
SKD01156.1 | SKD08013.1 | SAMN05660461_2085 | SAMN05660461_3964 | DNA ligase-1. | Bifunctional non-homologous end joining protein LigD. | 0.526 |
SKD05185.1 | SKC96149.1 | SAMN05660461_3033 | SAMN05660461_0616 | Signal peptidase I; Belongs to the peptidase S26 family. | Bifunctional non-homologous end joining protein LigD. | 0.802 |
SKD05185.1 | SKC99912.1 | SAMN05660461_3033 | SAMN05660461_1644 | Signal peptidase I; Belongs to the peptidase S26 family. | Regulator of sigma E protease. | 0.755 |
SKD05185.1 | SKD01156.1 | SAMN05660461_3033 | SAMN05660461_2085 | Signal peptidase I; Belongs to the peptidase S26 family. | DNA ligase-1. | 0.791 |
SKD05185.1 | SKD06475.1 | SAMN05660461_3033 | SAMN05660461_3442 | Signal peptidase I; Belongs to the peptidase S26 family. | Lipoprotein-releasing system permease protein. | 0.726 |
SKD05185.1 | SKD07951.1 | SAMN05660461_3033 | SAMN05660461_3902 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamA. | 0.760 |
SKD05185.1 | SKD08013.1 | SAMN05660461_3033 | SAMN05660461_3964 | Signal peptidase I; Belongs to the peptidase S26 family. | Bifunctional non-homologous end joining protein LigD. | 0.802 |
SKD05185.1 | atpE | SAMN05660461_3033 | SAMN05660461_3717 | Signal peptidase I; Belongs to the peptidase S26 family. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.841 |
SKD05185.1 | rpmD | SAMN05660461_3033 | SAMN05660461_3490 | Signal peptidase I; Belongs to the peptidase S26 family. | Large subunit ribosomal protein L30. | 0.728 |
SKD05185.1 | secF | SAMN05660461_3033 | SAMN05660461_6070 | Signal peptidase I; Belongs to the peptidase S26 family. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.684 |
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