Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD05244.1L,D-transpeptidase catalytic domain. (519 aa)    
Predicted Functional Partners:
SKD00404.1
Penicillin-binding protein 1A.
     
 0.594
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.560
SKC97041.1
Murein L,D-transpeptidase YafK.
  
   
 0.548
SKD08198.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
     
 0.529
SKD05240.1
L,D-transpeptidase catalytic domain.
 
   
 0.485
SKD08622.1
Beta-lactamase enzyme family protein.
   
 
 0.478
SKD07020.1
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.475
SKD05247.1
Hypothetical protein.
       0.470
SKD05511.1
LysM domain-containing protein.
  
  
  0.457
SKD10086.1
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.417
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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