Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKD02680.1 | SKD05585.1 | SAMN05660461_2606 | SAMN05660461_3140 | Protein of unknown function. | Peptidase family M48. | 0.478 |
SKD02680.1 | SKD08521.1 | SAMN05660461_2606 | SAMN05660461_4388 | Protein of unknown function. | PAS domain S-box-containing protein. | 0.711 |
SKD02680.1 | SKD08756.1 | SAMN05660461_2606 | SAMN05660461_4633 | Protein of unknown function. | Signal transduction histidine kinase. | 0.522 |
SKD02680.1 | SKD10125.1 | SAMN05660461_2606 | SAMN05660461_6028 | Protein of unknown function. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.569 |
SKD05585.1 | SKD02680.1 | SAMN05660461_3140 | SAMN05660461_2606 | Peptidase family M48. | Protein of unknown function. | 0.478 |
SKD05585.1 | SKD06501.1 | SAMN05660461_3140 | SAMN05660461_3451 | Peptidase family M48. | Flp pilus assembly protein TadD, contains TPR repeats. | 0.514 |
SKD05585.1 | SKD07691.1 | SAMN05660461_3140 | SAMN05660461_3764 | Peptidase family M48. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.546 |
SKD05585.1 | SKD07693.1 | SAMN05660461_3140 | SAMN05660461_3765 | Peptidase family M48. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.487 |
SKD05585.1 | SKD08521.1 | SAMN05660461_3140 | SAMN05660461_4388 | Peptidase family M48. | PAS domain S-box-containing protein. | 0.671 |
SKD05585.1 | SKD08756.1 | SAMN05660461_3140 | SAMN05660461_4633 | Peptidase family M48. | Signal transduction histidine kinase. | 0.509 |
SKD05585.1 | SKD10125.1 | SAMN05660461_3140 | SAMN05660461_6028 | Peptidase family M48. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.599 |
SKD05585.1 | SKD10403.1 | SAMN05660461_3140 | SAMN05660461_6316 | Peptidase family M48. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.449 |
SKD05585.1 | plsY | SAMN05660461_3140 | SAMN05660461_3141 | Peptidase family M48. | Glycerol-3-phosphate acyltransferase PlsY; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.588 |
SKD05585.1 | ribBA | SAMN05660461_3140 | SAMN05660461_1302 | Peptidase family M48. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.706 |
SKD06501.1 | SKD05585.1 | SAMN05660461_3451 | SAMN05660461_3140 | Flp pilus assembly protein TadD, contains TPR repeats. | Peptidase family M48. | 0.514 |
SKD06501.1 | SKD08521.1 | SAMN05660461_3451 | SAMN05660461_4388 | Flp pilus assembly protein TadD, contains TPR repeats. | PAS domain S-box-containing protein. | 0.912 |
SKD06501.1 | SKD08756.1 | SAMN05660461_3451 | SAMN05660461_4633 | Flp pilus assembly protein TadD, contains TPR repeats. | Signal transduction histidine kinase. | 0.732 |
SKD06501.1 | SKD10125.1 | SAMN05660461_3451 | SAMN05660461_6028 | Flp pilus assembly protein TadD, contains TPR repeats. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.803 |
SKD06501.1 | ribBA | SAMN05660461_3451 | SAMN05660461_1302 | Flp pilus assembly protein TadD, contains TPR repeats. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.898 |
SKD07691.1 | SKD05585.1 | SAMN05660461_3764 | SAMN05660461_3140 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Peptidase family M48. | 0.546 |
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