STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD05832.1alpha-L-fucosidase. (446 aa)    
Predicted Functional Partners:
SKD09077.1
alpha-L-fucosidase.
  
  
 
0.674
SKD01672.1
alpha-L-fucosidase.
  
  
 
0.671
SKD06168.1
alpha-L-fucosidase.
 
  
 
0.635
SKC95022.1
alpha-L-fucosidase.
 
  
 
0.634
SKD00241.1
alpha-L-fucosidase.
 
  
 
0.630
SKD00715.1
alpha-L-fucosidase.
 
  
 
0.624
SKD05835.1
1-aminocyclopropane-1-carboxylate deaminase.
       0.535
SKD05828.1
Phosphotransferase enzyme family protein.
  
    0.533
SKD05830.1
dTDP-glucose pyrophosphorylase.
       0.532
SKC98304.1
Protein of unknown function.
 
     0.500
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.