STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD05835.11-aminocyclopropane-1-carboxylate deaminase. (294 aa)    
Predicted Functional Partners:
SKC94749.1
Cystathionine beta-synthase.
  
 
 0.844
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.816
SKD06559.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
     
  0.737
SKD06855.1
2-oxoisovalerate dehydrogenase E1 component.
     
  0.737
SKD08203.1
2-oxoisovalerate dehydrogenase E1 component.
     
  0.737
SKD04559.1
Aspartate 4-decarboxylase.
  
  
  0.702
SKC98675.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.672
SKD06566.1
Aspartate aminotransferase.
     
  0.664
SKD10527.1
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
  
  0.658
SKD08495.1
Aspartate aminotransferase.
     
  0.638
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.