STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD05835.11-aminocyclopropane-1-carboxylate deaminase. (294 aa)    
Predicted Functional Partners:
SKC94749.1
Cystathionine beta-synthase.
    
 0.850
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.831
SKD05837.1
Hypothetical protein.
       0.636
SKD06402.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
  
  0.569
SKC99643.1
Cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.546
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
    
  0.538
SKD05832.1
alpha-L-fucosidase.
       0.535
SKD04559.1
Aspartate 4-decarboxylase.
  
  
  0.530
SKC97957.1
Hydroxyacylglutathione hydrolase.
    
  0.498
SKC99847.1
HopJ type III effector protein.
  
     0.452
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.