Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD06004.1Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (247 aa)    
Predicted Functional Partners:
SKD05999.1
Zinc transporter ZupT.
     
 0.815
SKD06002.1
Undecaprenyl-diphosphatase.
       0.797
SKD05996.1
Putative hemolysin.
       0.709
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.690
SKD06006.1
Phosphoglycerol transferase MdoB.
       0.680
SKD04916.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
    
 0.658
SKC96322.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD07775.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD09919.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD06009.1
Phosphomannomutase.
   
   0.560
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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