Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD06102.1Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily. (445 aa)    
Predicted Functional Partners:
SKD06103.1
Starch-binding associating with outer membrane.
       0.732
nadK
NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.723
SKD06104.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.716
SKD06105.1
FecR family protein.
       0.679
SKC95724.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.491
SKD06106.1
RNA polymerase sigma-70 factor, ECF subfamily; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
       0.457
SKC97874.1
Phosphorylase / glycogen(starch) synthase.
     
 0.417
SKC96800.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
    
  0.413
SKC97141.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
    
  0.413
SKD00749.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
    
  0.413
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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