Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD06142.1Hypothetical protein. (512 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 0.831
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.814
SKD06140.1
WD40-like Beta Propeller Repeat; Degrades oligopeptides; Belongs to the peptidase S41B family.
       0.574
SKD08126.1
comF family protein.
  
    0.571
SKD06138.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.555
SKD05544.1
Coproporphyrinogen oxidase.
  
 
 0.530
SKD09713.1
Magnesium chelatase subunit I.
   
 
 0.515
SKD02427.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.482
SKD09943.1
Putative iron-dependent peroxidase.
     
 0.468
SKD01779.1
Magnesium chelatase family protein.
     
  0.463
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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