STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06173.1FecR family protein. (325 aa)    
Predicted Functional Partners:
SKD09476.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.747
SKD09856.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.738
SKD06174.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.727
SKD07091.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.707
SKD09978.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.707
SKD04890.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.683
SKD01963.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.648
SKD09575.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.619
SKC99909.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.616
SKD06169.1
Starch-binding associating with outer membrane.
 
     0.510
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.