STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06478.1Hypothetical protein. (776 aa)    
Predicted Functional Partners:
SKD06481.1
Hypothetical protein.
 
     0.952
SKD06483.1
RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.773
SKD09177.1
Protein of unknown function.
  
     0.615
SKD09143.1
Protein of unknown function.
  
     0.603
SKD08682.1
Thioredoxin-like.
  
     0.563
SKD00539.1
Protein of unknown function.
  
     0.557
SKD06487.1
Outer membrane protein assembly factor BamA.
       0.544
SKC94962.1
ABC-2 type transporter.
  
     0.499
SKD08004.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.499
SKC99359.1
Delta-60 repeat domain-containing protein.
  
     0.492
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.