STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06562.1Protein of unknown function. (136 aa)    
Predicted Functional Partners:
SKD08775.1
DoxX protein.
  
     0.745
SKD03125.1
uroporphyrinogen-III synthase.
  
     0.735
SKD07991.1
Protein of unknown function.
  
     0.726
SKD07006.1
Protein TonB.
  
     0.675
SKD10229.1
Lipopolysaccharide transport protein LptA.
  
     0.661
SKD08059.1
Protein of unknown function.
  
     0.640
SKD02455.1
Rod shape-determining protein MreD.
  
     0.624
SKD05053.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.621
SKD00407.1
Tetratricopeptide repeat-containing protein.
  
     0.617
SKC98878.1
Family of unknown function.
  
     0.615
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.