Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD06717.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.690
SKD04916.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
    
 0.658
SKC96322.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD07775.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD09919.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.580
SKD06714.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
       0.569
SKD06711.1
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains.
       0.566
SKD08696.1
Polynucleotide kinase-phosphatase.
   
   0.542
SKD10141.1
HDIG domain-containing protein.
   
   0.530
SKD02784.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.496
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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