STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06752.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (373 aa)    
Predicted Functional Partners:
SKD00580.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.879
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
    
 0.848
SKD09259.1
Xylan 1,4-beta-xylosidase.
     
 0.840
SKD09386.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
    
 0.764
uxaC
Glucuronate isomerase.
    
 0.726
uxaC-2
Glucuronate isomerase.
    
 0.726
SKD00722.1
Xylan 1,4-beta-xylosidase.
     
 0.676
SKC95737.1
Endo-1,4-beta-xylanase.
 
  
 0.648
SKC95784.1
Beta-xylosidase.
  
  
  0.640
SKD10316.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.634
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.