STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06791.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
SKD06793.1
Hypothetical protein.
       0.768
SKC96066.1
Protein N-acetyltransferase, RimJ/RimL family.
    
  0.500
SKD06375.1
Cupin domain-containing protein.
  
  0.488
SKD06795.1
Hypothetical protein.
       0.471
SKD06796.1
Hypothetical protein.
       0.471
SKD06799.1
Protein of unknown function.
       0.465
SKD06800.1
Hypothetical protein.
       0.465
SKD06805.1
Hypothetical protein.
       0.462
SKD06807.1
Hypothetical protein.
       0.462
SKD06788.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.458
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.