STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD06986.1HTH domain-containing protein. (91 aa)    
Predicted Functional Partners:
SKD09164.1
Hypothetical protein.
  
     0.599
SKD08817.1
DNA polymerase-3 subunit epsilon.
    
 0.590
SKC99049.1
Hypothetical protein.
  
     0.550
SKD06989.1
AhpC/TSA family protein.
 
     0.521
SKC95308.1
Hypothetical protein.
  
     0.508
SKD07048.1
Hypothetical protein.
  
     0.504
SKD08186.1
Hypothetical protein.
  
     0.480
SKD09830.1
Lanthionine synthetase C-like protein.
  
     0.472
SKD01482.1
RNA polymerase Rpb6.
    
   0.471
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.471
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.