STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD07601.1Hypothetical protein. (732 aa)    
Predicted Functional Partners:
SKD05837.1
Hypothetical protein.
  
     0.774
SKD10481.1
Protein of unknown function.
  
     0.774
SKD07827.1
Tetratricopeptide repeat-containing protein.
  
     0.773
SKD02765.1
YcxB-like protein.
  
     0.770
SKD00396.1
Putative porin.
  
     0.769
SKD07759.1
Tfp pilus assembly protein PilF.
  
     0.769
SKD08677.1
Hypothetical protein.
  
     0.769
SKC96772.1
Protein of unknown function.
  
     0.766
SKD06694.1
Hypothetical protein.
  
     0.766
SKD05351.1
Hypothetical protein.
  
     0.764
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.