SKD07919.1 protein (Chitinophaga ginsengisegetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKD07919.1

Chain length determinant protein. (362 aa)

Predicted Functional Partners:

SKD07921.1

0.979

SKD09289.1

0.879

SKD05043.1

0.701

SKD09279.1

0.701

SKD09648.1

0.701

SKC97268.1

0.524

SKC98975.1

0.524

SKD07915.1

0.524

SKD07917.1

0.524

SKD09647.1

0.521

Your Current Organism:

Chitinophaga ginsengisegetis

NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC97268.1	SKD07919.1	SAMN05660461_0883	SAMN05660461_3874	Hypothetical protein.	Chain length determinant protein.	0.524
SKC98975.1	SKD07919.1	SAMN05660461_1323	SAMN05660461_3874	Hypothetical protein.	Chain length determinant protein.	0.524
SKD05043.1	SKD07919.1	SAMN05660461_2995	SAMN05660461_3874	Polysaccharide export outer membrane protein.	Chain length determinant protein.	0.701
SKD05043.1	SKD09279.1	SAMN05660461_2995	SAMN05660461_5163	Polysaccharide export outer membrane protein.	Polysaccharide export outer membrane protein.	0.763
SKD05043.1	SKD09289.1	SAMN05660461_2995	SAMN05660461_5173	Polysaccharide export outer membrane protein.	Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.	0.961
SKD05043.1	SKD09647.1	SAMN05660461_2995	SAMN05660461_5536	Polysaccharide export outer membrane protein.	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.	0.685
SKD05043.1	SKD09648.1	SAMN05660461_2995	SAMN05660461_5537	Polysaccharide export outer membrane protein.	Polysaccharide export outer membrane protein.	0.749
SKD07915.1	SKD07917.1	SAMN05660461_3872	SAMN05660461_3873	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).	4-hydroxy 2-oxovalerate aldolase.	0.778
SKD07915.1	SKD07919.1	SAMN05660461_3872	SAMN05660461_3874	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).	Chain length determinant protein.	0.524
SKD07915.1	SKD07921.1	SAMN05660461_3872	SAMN05660461_3875	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.	0.495
SKD07917.1	SKD07915.1	SAMN05660461_3873	SAMN05660461_3872	4-hydroxy 2-oxovalerate aldolase.	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).	0.778
SKD07917.1	SKD07919.1	SAMN05660461_3873	SAMN05660461_3874	4-hydroxy 2-oxovalerate aldolase.	Chain length determinant protein.	0.524
SKD07917.1	SKD07921.1	SAMN05660461_3873	SAMN05660461_3875	4-hydroxy 2-oxovalerate aldolase.	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.	0.488
SKD07919.1	SKC97268.1	SAMN05660461_3874	SAMN05660461_0883	Chain length determinant protein.	Hypothetical protein.	0.524
SKD07919.1	SKC98975.1	SAMN05660461_3874	SAMN05660461_1323	Chain length determinant protein.	Hypothetical protein.	0.524
SKD07919.1	SKD05043.1	SAMN05660461_3874	SAMN05660461_2995	Chain length determinant protein.	Polysaccharide export outer membrane protein.	0.701
SKD07919.1	SKD07915.1	SAMN05660461_3874	SAMN05660461_3872	Chain length determinant protein.	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).	0.524
SKD07919.1	SKD07917.1	SAMN05660461_3874	SAMN05660461_3873	Chain length determinant protein.	4-hydroxy 2-oxovalerate aldolase.	0.524
SKD07919.1	SKD07921.1	SAMN05660461_3874	SAMN05660461_3875	Chain length determinant protein.	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.	0.979
SKD07919.1	SKD09279.1	SAMN05660461_3874	SAMN05660461_5163	Chain length determinant protein.	Polysaccharide export outer membrane protein.	0.701