Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD08126.1comF family protein. (229 aa)    
Predicted Functional Partners:
SKD01354.1
DNA processing protein.
 
 
 0.925
SKD08064.1
Competence protein ComEC.
 
  
 0.900
SKD01779.1
Magnesium chelatase family protein.
 
  
 0.857
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
     
  0.815
SKD05744.1
Prephenate dehydrogenase.
   
    0.800
radA
DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
     
 0.784
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
  0.743
SKD06867.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.670
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
  0.650
SKC98047.1
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.621
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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