Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD08148.1Rhomboid family protein. (275 aa)    
Predicted Functional Partners:
SKD08147.1
23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.817
SKD08149.1
Membrane associated serine protease, rhomboid family.
 
     0.767
SKD00461.1
Membrane associated serine protease, rhomboid family.
 
     0.700
SKD08146.1
Protein of unknown function.
 
     0.623
SKD10231.1
N-acetylmuramoyl-L-alanine amidase.
 
 
   0.611
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.578
SKD08639.1
Membrane associated serine protease, rhomboid family.
  
     0.572
SKD00658.1
Membrane associated serine protease, rhomboid family.
  
     0.561
SKD02851.1
Transcriptional regulator, TraR/DksA family.
  
     0.548
SKD07967.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.528
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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