Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKD08170.1Patatin-like phospholipase. (743 aa)    
Predicted Functional Partners:
SKD01278.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.752
SKD00179.1
Hypothetical protein.
  
     0.750
SKD01238.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.749
SKD07679.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.743
SKD02927.1
Hypothetical protein.
  
     0.711
SKD10408.1
Hypothetical protein.
  
     0.688
SKD05439.1
CarboxypepD_reg-like domain-containing protein.
  
     0.680
SKD07953.1
Hypothetical protein.
  
     0.676
SKD01367.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.674
SKD10119.1
YD repeat-containing protein.
  
     0.666
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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