Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD08220.1TonB family C-terminal domain-containing protein. (566 aa)    
Predicted Functional Partners:
SKD08219.1
Predicted transcriptional regulator; Manually curated.
 
 
 0.988
SKD06039.1
Predicted transcriptional regulator.
 
 
 0.956
SKD05612.1
Predicted transcriptional regulator.
 
 
 0.953
SKD10218.1
Predicted transcriptional regulator.
 
 
 0.834
SKD05615.1
TonB family C-terminal domain-containing protein.
 
  
 
0.795
SKD10217.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
     
  0.714
SKD08218.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
       0.512
SKD07006.1
Protein TonB.
     
  0.453
SKD07104.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
     
  0.453
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.