STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08269.1Outer membrane protein assembly factor BamA. (828 aa)    
Predicted Functional Partners:
SKD08270.1
Family of unknown function.
 
   
 0.951
SKC99482.1
TolA-binding protein.
  
 
 0.817
SKD01490.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.786
SKD08144.1
Outer membrane insertion C-terminal signal.
  
 
 
 0.680
SKC99912.1
Regulator of sigma E protease.
 
  
 0.634
SKD08578.1
Hypothetical protein.
  
     0.546
SKC97575.1
CarboxypepD_reg-like domain-containing protein.
  
 
 0.543
SKD06256.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
 
 0.543
SKC99285.1
Hypothetical protein.
  
 
 0.539
SKD02407.1
Hypothetical protein.
  
 
 0.539
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.