Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SKD08334.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
SKD08332.1
Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.936
SKD08345.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.924
SKD08337.1
Cytochrome c oxidase accessory protein FixG.
 
   
 0.914
SKD08336.1
FixH protein.
 
     0.913
SKD08339.1
Cytochrome c oxidase cbb3-type subunit 3.
 
   
 0.912
SKD08350.1
Cu+-exporting ATPase.
 
   
 0.863
SKD08347.1
Cytochrome oxidase maturation protein, cbb3-type.
 
   
 0.857
SKD08341.1
Cbb3-type cytochrome oxidase component FixQ.
 
   
 0.736
SKD08349.1
Cupin domain-containing protein.
       0.483
SKD08354.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
 
     0.420
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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