STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08354.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (236 aa)    
Predicted Functional Partners:
SKD08274.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.860
SKD10094.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.706
SKD01417.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
    
  0.691
SKD08350.1
Cu+-exporting ATPase.
 
     0.677
SKD09818.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
  0.621
SKD10422.1
Signal transduction histidine kinase.
   
 0.610
SKD08521.1
PAS domain S-box-containing protein.
   
 0.607
SKC96166.1
Signal transduction histidine kinase.
   
 0.601
SKD10129.1
PAS domain S-box-containing protein.
   
 0.601
SKD08356.1
23S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family.
       0.560
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.