STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08501.1Hypothetical protein. (528 aa)    
Predicted Functional Partners:
SKD08504.1
Bifunctional NMN adenylyltransferase/nudix hydrolase.
 
  
 0.925
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.895
SKD08503.1
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
 
  
 0.831
SKC99473.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.825
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
 
  0.746
SKD08421.1
Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
  
     0.633
SKD03093.1
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Belongs to the NadC/ModD family.
     
 0.621
SKD09327.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.589
SKD08505.1
8-oxo-dGTP diphosphatase.
 
  
 0.586
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
    
 0.562
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.