Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD08704.1Peptide/nickel transport system substrate-binding protein. (547 aa)    
Predicted Functional Partners:
SKD07963.1
Peptide/nickel transport system permease protein.
 
 0.997
SKD08774.1
Peptide/nickel transport system permease protein.
 
 0.997
SKD06874.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.991
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
    0.834
SKD08421.1
Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
     
  0.695
SKC97537.1
Hypothetical protein.
  
 
 0.629
SKD08703.1
Peptidase family M1.
     
 0.605
SKD08705.1
stearoyl-CoA desaturase (delta-9 desaturase).
       0.510
SKC94583.1
ATP-binding cassette, subfamily F, member 3.
   
 
 0.488
SKD05648.1
ATPase components of ABC transporters with duplicated ATPase domains.
   
 
 0.488
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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