STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08758.1Tetratricopeptide repeat-containing protein. (417 aa)    
Predicted Functional Partners:
SKD01370.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.749
SKC94546.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.739
SKC98878.1
Family of unknown function.
  
     0.724
SKD01152.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.716
SKD03096.1
Protein of unknown function.
  
     0.707
SKC94679.1
Right handed beta helix region.
  
     0.704
SKD09664.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.702
SKC99495.1
Hypothetical protein.
  
     0.697
SKD05511.1
LysM domain-containing protein.
  
     0.694
SKD07646.1
Peptidase family M23.
  
     0.693
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.