Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKD08773.1RNA polymerase sigma-70 factor, ECF subfamily. (171 aa)    
Predicted Functional Partners:
SKD08772.1
Hypothetical protein.
 
     0.827
SKC95226.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.758
SKD08771.1
Protein of unknown function.
 
     0.752
SKD07641.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.748
SKD06819.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.709
SKD08770.1
Protein of unknown function.
       0.630
SKC96356.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.628
SKC99298.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.560
SKC98263.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.551
SKD08774.1
Peptide/nickel transport system permease protein.
       0.545
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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