STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (299 aa)    
Predicted Functional Partners:
SKD08428.1
Ftsk gamma domain-containing protein; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.615
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.583
SKD10147.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
   
 0.573
SKC99987.1
Chromosome partitioning protein.
  
     0.570
SKD08126.1
comF family protein.
  
    0.549
SKC99990.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
  
 0.512
SKD09011.1
Chromosome partitioning protein.
  
     0.498
SKD05744.1
Prephenate dehydrogenase.
  
    0.495
SKD09815.1
PRTase ComF-like.
   
    0.469
SKD07635.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
   
 0.442
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.